open access publication

Article, 2024

Transport‐controlled growth decoupling for self‐induced protein expression with a glycerol‐repressible genetic circuit

Biotechnology and Bioengineering, ISSN 1097-0290, 0006-3592, Volume 121, 6, Pages 1789-1802, 10.1002/bit.28697

Contributors

Lara, Alvaro R 0000-0003-3535-7619 (Corresponding author) [1] Kunert, Flavio 0009-0008-9297-1854 [2] Vandenbroucke, Vincent 0000-0003-3510-4793 [3] Taymaz-Nikerel, Hi lal [4] Martínez, Luz María [5] Sigala, Juan-Carlos 0000-0002-1665-5680 [6] Delvigne, Frank 0000-0002-1679-1914 [3] Gosset, Guillermo 0000-0003-3127-0911 [5] Büchs, Jochen 0000-0002-2012-3476 [2]

Affiliations

  1. [1] Aarhus University
  2. [NORA names: AU Aarhus University; University; Denmark; Europe, EU; Nordic; OECD];
  3. [2] RWTH Aachen University
  4. [NORA names: Germany; Europe, EU; OECD];
  5. [3] Gembloux Agro-Bio Tech
  6. [NORA names: Belgium; Europe, EU; OECD];
  7. [4] Istanbul Bilgi University
  8. [NORA names: Turkey; Asia, Middle East; OECD];
  9. [5] National Autonomous University of Mexico
  10. [NORA names: Mexico; America, Central; OECD];

Abstract

Decoupling cell formation from recombinant protein synthesis is a potent strategy to intensify bioprocesses. Escherichia coli strains with mutations in the glucose uptake components lack catabolite repression, display low growth rate, no overflow metabolism, and high recombinant protein yields. Fast growth rates were promoted by the simultaneous consumption of glucose and glycerol, and this was followed by a phase of slow growth, when only glucose remained in the medium. A glycerol-repressible genetic circuit was designed to autonomously induce recombinant protein expression. The engineered strain bearing the genetic circuit was cultured in 3.9 g L-1 glycerol + 18 g L-1 glucose in microbioreactors with online oxygen transfer rate monitoring. The growth was fast during the simultaneous consumption of both carbon sources (C-sources), while expression of the recombinant protein was low. When glycerol was depleted, the growth rate decreased, and the specific fluorescence reached values 17% higher than those obtained with a strong constitutive promoter. Despite the relatively high amount of C-source used, no oxygen limitation was observed. The proposed approach eliminates the need for the substrate feeding or inducers addition and is set as a simple batch culture while mimicking fed-batch performance.

Keywords

Autonomous, C sources, Escherichia coli strains, addition, amount, batch, batch culture, bioprocess, carbon, carbon source, catabolite, catabolite repression, cell formation, circuit, components, constitutive promoter, consumption, consumption of glucose, culture, decoupling, engineered strain, expression, fast growth rate, fed-batch performance, feeding, fluorescence, formation, genetic circuits, glucose, glycerol, growth, growth decoupling, growth rate, inducer, inducer addition, intensify bioprocesses, limitations, medium, metabolism, microbioreactor, monitoring, mutations, no oxygen limitation, overflow, overflow metabolism, oxygen limitation, performance, phase, phase of slow growth, promoter, protein, protein expression, protein synthesis, rate, rate monitoring, recombinant protein expression, recombinant protein synthesis, recombinant proteins, repression, simultaneous consumption, simultaneous consumption of glucose, slow growth, source, strain, substrate feeding, synthesis, uptake component

Funders

  • RWTH Aachen University
  • Consejo Nacional de Humanidades, Ciencias y Tecnologías

Data Provider: Digital Science