open access publication

Article, 2024

Discrete newtonian dynamics with Nosé-Hoover thermostats

Molecular Physics, ISSN 1362-3028, 0026-8976, Volume ahead-of-print, ahead-of-print, Page e2314701, 10.1080/00268976.2024.2314701

Contributors

Toxvaerd, So Ren (Corresponding author) [1]

Affiliations

  1. [1] Roskilde University
  2. [NORA names: RUC Roskilde University; University; Denmark; Europe, EU; Nordic; OECD]

Abstract

Almost all Molecular Dynamics (MD) simulations are discrete dynamics with Newton's algorithm first published in 1687, and much later by L. Verlet in 1967. Discrete Newtonian dynamics has the same qualities as Newton's classical analytic dynamics. Verlet also published a first-order expression for the instant temperature which is inaccurate but presumably used in most MD simulations. One of the motivations for the present article is to correct this unnecessary inaccuracy in NV T MD dynamics. Another motivation is to derive simple algorithms for the Nosé-Hoover NV T dynamics (NH) with the correct temperature constraint. The simulations with NH discrete Newtonian dynamics show that the NH works excellent for a wide range of the response time τ of the NH thermostat, but NH simulations favour a choice of a short response time, even shorter than the discrete time increment δt used in MD, to avoid large oscillations of the temperature.

Keywords

MD, MD simulations, Molecular, Molecular Dynamics (MD, Newton, Newton algorithm, Newtonian dynamics, Nose-Hoover thermostat, Verlet, algorithm, analytical dynamics, article, constraints, dynamics, expression, inaccuracy, instant temperature, instants, motivation, oscillations, quality, response, response time, response time T, short response time, simulation, temperature, temperature constraints, thermostat, time, time t

Data Provider: Digital Science