open access publication

Article, 2020

Dissecting the genome of star fruit (Averrhoa carambola L.)

Horticulture Research, ISSN 2662-6810, 2052-7276, Volume 7, 1, Page 94, 10.1038/s41438-020-0306-4

Contributors

Fan, Yannan 0000-0003-3308-6878 [1] Sahu, Sunil Kumar 0000-0002-4742-9870 [1] Yang, Ting 0000-0002-2872-4954 [1] Mu, Wei-Xue 0000-0002-2675-261X [1] Wei, Jinpu 0000-0002-1463-0236 [1] Cheng, Le [2] Yang, Jinlong [2] Mu, Ranchang [3] Liu, Jie [3] Zhao, Jianming [3] Zhao, Yuxian [4] Xu, Xun 0000-0002-5338-5173 [1] [2] Liu, Xin 0000-0003-3256-2940 [1] [2] Liu, Huan 0000-0003-3909-0931 (Corresponding author) [1] [5]

Affiliations

  1. [1] China National GeneBank
  2. [NORA names: China; Asia, East];
  3. [2] BGI Group (China)
  4. [NORA names: China; Asia, East];
  5. [3] Forestry Bureau of Ruili, Yunnan Dehong, 678600 Ruili, China
  6. [NORA names: China; Asia, East];
  7. [4] Chinese Academy of Forestry
  8. [NORA names: China; Asia, East];
  9. [5] University of Copenhagen
  10. [NORA names: KU University of Copenhagen; University; Denmark; Europe, EU; Nordic; OECD]

Abstract

Averrhoa carambola is commonly known as star fruit because of its peculiar shape, and its fruit is a rich source of minerals and vitamins. It is also used in traditional medicines in countries such as India, China, the Philippines, and Brazil for treating various ailments, including fever, diarrhea, vomiting, and skin disease. Here, we present the first draft genome of the Oxalidaceae family, with an assembled genome size of 470.51 Mb. In total, 24,726 protein-coding genes were identified, and 16,490 genes were annotated using various well-known databases. The phylogenomic analysis confirmed the evolutionary position of the Oxalidaceae family. Based on the gene functional annotations, we also identified enzymes that may be involved in important nutritional pathways in the star fruit genome. Overall, the data from this first sequenced genome in the Oxalidaceae family provide an essential resource for nutritional, medicinal, and cultivational studies of the economically important star-fruit plant.

Keywords

Brazil, China, India, Oxalidaceae, Oxalidaceae family, Philippines, ailments, analysis, annotation, assembled genome size, countries, cultivation studies, data, database, diarrhea, disease, enzyme, evolutionary position, family, fever, fruit, functional annotation, gene function annotation, genes, genome, genome size, medicine, minerals, nutritional pathways, pathway, phylogenomic analysis, plants, position, protein-coding genes, resources, sequenced genomes, shape, size, skin, skin diseases, source, source of minerals, star fruit, star fruit plants, stars, study, treat various ailments, vitamin, vomiting

Funders

  • State Council of the People's Republic of China
  • Ministry of Science and Technology of the People's Republic of China

Data Provider: Digital Science